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Dr Jonathan Weber, PhD in Computer Science

Associate Professor @ Université de Haute-Alsace

Lecturer @ ENSISA

Researcher @ IRIMAS

Keywords
  • Deep Learning
  • Time series classification
  • Data Science
  • Image processing
  • Mathematical morphology
  • Pattern Recognition

Latest news
February 2021: Paper accepted in Machine Learning with Application !
January 2021: Habilitation à Diriger des Recherches defended !
Sepetmber 2020: Dr. Hassan Ismail Fawaz defended his PhD !
September 2020: Paper accepted at ICTAI 2020 !
July 2020: Paper accepted in Data Mining and Knowledge Discovery !
July 2020: Paper accepted at DocEng 2020 !
May 2020: Paper accepted at TPDL 2020 !
April 2020: Paper accepted at CBMS 2020 !
March 2020: Papers accepted at IJCNN 2020 and CEC 2020 !
March 2020: Speaker at Workshop: Hands-on Machine Learning Applied to Medical Imaging
March 2020: I will give a talk about Deep Learning at École de Printemps IDHN
January 2020 : We organize APTA : a workshop on Deep Learning at EGC 2020
November 2019 : Start of Romain Wenger PhD Thesis !
November 2019 : Kick-Off of AiCOLO project
October 2019 : Mi-Edge project funded by ERACoSysMed on glioblastoma early relapse risk!
October 2019 : Start of Robin Heckenauer PhD Thesis !
September 2019 : Dr. Bastien Latard defended his PhD !
July 2019 : Papers accepted at IJCARS, ISPA 2019 and MACLEAN 2019 !
April 2019 : Paper accepted in Artificial Intelligence Review !
April 2019 : Scientific stay at MH-Hannover to work with Prof. Friederich Feuerhake (DAAD Grant) March 2019 : Paper accepted at AIME 2019 !
March 2019 : Two papers accepted at IJCNN 2019 !
February 2019 : Start of Tsegamlak Terefe Debella PhD thesis
January 2019 : Paper accepted in Data Mining and Knowledge Discovery
November 2018 : Grant from DAAD obtained for a scientific stay at MH-Hannover !
October 2018 : Paper accepted at Big Data 2018 !
October 2018 : Start of Baptiste Lafabregue PhD thesis
August 2018 : Paper accepted in Artificial Intelligence in Medicine
July 2018 : Paper accepted at MICCAI 2018 !
November 2017 : Start of Mounir Bendali PhD thesis
October 2017 : Start of Hassan Ismail Fawaz PhD thesis
September 2017 : Paper accepted at ICTAI 2017 !
August 2017 : SYSIMIT meeting at definiens, Munchen
September 2016 : Start of Bastien Latard PhD thesis
September 2016 : New position at Université de Haute-Alsace
June2016 : 16th Festival MMI, Festival of the Web and Multimedia departments (in french)
October 2015 : Debate about Journalism and Artificial Intelligence (in french)

Open positions

Bio
Positions
Since 2016 Associate Professor Université de Haute-Alsace
2012-2016 Associate Professor Université de Lorraine
2011-2012 Teaching and Research Assistant Université de Lorraine
2010-2011 Teaching and Research Assistant Université de Strasbourg
2007-2010 R&D Engineer Ready Business System
Responsabilities
Since 2022 Head of Computer Science and Network department ENSISA
Since 2022 Head of MSD research team IRIMAS
Since 2021 Deputy Vice-President for Security and Defense Université de Haute-Alsace
2018-2022 Co-Head of Master Computer Science and Mobility Faculty of Science and Technology, Mulhouse
2017-2022 Head of DU UHA 4.0.4 UHA 4.0
2013-2016 Head of Multimedia and Web Department Saint-Dié Institute of Technology
Education
2021 Habilitation à Diriger des Recherches in Computer Science Université de Haute-Alsace
2011 PhD in Computer Science Université de Strasbourg
2007 MSc in Computer Science Université de Strasbourg
Organising Committee Member
Association Member
Program Committee Member
Reviewer
Research
Research Projects
Name Type Date Involvment
DELEGATION ANR JCJC 2022-2025 Member
APIAC Région Grand-Est 2021-2023 Member
ENYGMA Région Grand-Est 2021-2023 Member
Mi-EDGE ERACoSysMed 2020-2023 Member
AiCOLO INSERM/Plan Cancer 2019-2021 Member
TIMES ANR 2017-2023 Member
OPMoPS ANR/BMBF 2017-2020 Member
PLASIDIA AMI 2017-2018 Member
APIM PIR UHA 2017 Project Leader
Sys-MIFTA ERACoSysMed 2016-2019 Member
SYSIMIT BMBF 2015-2018 Member
ECOSGIL ANR-JC 2005-2008 Master Student
FoDoMuSt ACI 2004-2007 Master Student
(Co-)Supervised students/engineers/post-docs
Post-Doc Date Subject
Oumaima Jrad 2021 - ... Deep learning for non destructive control
Bonan Cuan 2020 - ... Deep learning for multimodal image analysis in neuroradiology and histopathology
Amina Ben Hamida 2020 - ... Deep learning for colon cancer histopathological images analysis
PhD student Date Subject
Ali El Hadi Ismail Fawaz 2022 - ... Deep Learning for human motion generation and time series analysis
Marceau Bamond 2021 - ... Homing Guidance for Projectiles using Event Cameras
Joachim Rimpot 2021 - ... Analysis of seismological data streams using machine learning
Mouad Hamri 2021 - ... Smart data extraction from invoices
Olivier Schirm 2020 - ... Time series analysis for hiking map generation
Gautier Pialla 2020 - ... AI and temporal data for medical applications
Alicia Roux 2020 - ... AI and automatic methods fusion for guided munitions navigation
Romain Wenger 2019 - ... Satellite image time-series analysis
Robin Heckenauer 2019 - ... Deep learning in digital pathology
Dr. Tsegamlak Terefe Debella 2019 - 2022 Optimal computation of average time series
Dr. Baptiste Lafabregue 2018 - 2021 Constrained clustering of satellite image time series
Dr. Mounir Bendali-Braham 2017 - 2022 Crowd behaviour analysis
Dr. Hassan Ismail Fawaz 2017 - 2020 Mining medical data
Dr. Bastien Latard 2016 - 2019 Semantic Analys of scientific articles
Master Student Date Subject
Ali El Hadi Ismail Fawaz 2022 Deep Learning for time series analysis
Javidan Abdullayev 2022 Knowledge distillation for time series
Elvin Ismayilzada 2022 Self-attention for time series classification
Amir Ayed 2022 Deep generative models for skeleton data
Asmaa Cherif 2022 Deep Learning for human motion analysis in rehabilitation
Emel Ay 2021 Knowledge distillation for time series
Amira Ayadi 2021 Deep Learning for human motion analysis in personalized rehabilitation
Alicia Roux 2020 AI and automatic methods fusion for guided munitions navigation
Lucas Collot-Penichot 2020 AI for guided munitions navigation
Robin Heckenauer 2019 Deep Learning applied to histopathological slides
Hugo Besadoux 2018 Deep Learning applied to LIDAR data
Nirma Naruka 2018 Diaphragm segmentation in 3D imagery
Oleg Eremin 2017 Deep Learning applied to medical imagery
Rahul Sahal 2017 Overlaid text extraction in news video
Giovanni de Angelis 2016 People counting using 3D camera
Antonio Terrone 2016 People counting using depth image
Roberto Pisapia 2016 People counting using embedded systems
Julien Bidolet 2014 Graph indexing for image classification
Michał Kowalczyk 2012 Image segmentation on mobile environment
Jean-François Kraemer 2010 Video segmentation/annotation tool
Vincent Danner 2009 Optimized video management for Pelican
Engineer Date Subject
Javidan Abdullayev 2022 - ... Deep learning for bank fraud detection
Abdul Wahid 2022 Deep learning for bank fraud detection
Paul Bourgeois 2018 - 2019 Time series analysis of diabetic patient data
Software

Pelican

Pelican LogoPolyvalent Extensible Library for Image Computing and ANalysis is a multi-platform framework, written in Java, dedicated to Image Processing. The project started at the Université de Strasbourg in 2005 but its contributors are no longer in this university. It allows the processing of image from different types (2D, video, 3D, 3D+t) and origins (casual, medical, astronomic, remote sensing, ...) and contains many standard image processing algorithms.
Pelican contains more than 100k lines of code and is freely available under CC BY-NC 4.0 license.

Code Download (66.3M)

Coastal

CoastlineSoftware developped during the ANR-JC ECOSGIL project. Written in Java, it is a tool dedicated to geographers. It achieves several processing on coastal remote sensing images such as the extraction of coastline. It uses the Pelican framework. It is still used by geographers (initial release dated from 2007).

Download (21.9M)

TeSySp

Symbol spotting exampleTeSySp (Technical Symbol Spotter) was initially developed to demonstrate our work on symbol spotting in technical documents. Written in Java, it is based on Pelican framework. It is an improvment of our initial approach, in particular the use of machine learning techniques to filter false-positives result. Moreover, TeSySp will allow to create ground-truth for symbol spotting and will contain different metrics to evaluate the quality of spotting results.

Code Still under development
Teaching
Institutions and departments
Since 2017 Information and Communication Department Faculty of Economics, Socials and Law studies, Mulhouse
Since 2017 Computer Science for Business Department Faculty of Science and Technology, Mulhouse
Since 2016 Computer Science Department École Nationale Supérieure d'Ingénieurs Sud-Alsace
2011-2016 Multimedia and Web Department Saint-Dié Institute of Technology
2013-2016 Computer Science Department Ecole Nationale Supérieure des Mines de Nancy
2009-2011 Computer Science Department Robert Schuman Institute of Technology
2009 Physical Measurements Department Louis Paster Institute of Technology
Courses
  • Web (HTML, CSS, PHP, Javascript, ...)
  • Operating Systems
  • Programming (C, C#, Java, Python, ...)
  • Database (SQL, UML)
  • Logic
  • Semantic Web
  • Artificial Intelligence
  • Content Management System
  • Mobile programming (Android)
  • Video game programming (Unity)
  • Project Management
  • Collaborative Tools
  • Security
  • Computer Graphics
  • Image processing
  • Mathematical Morphology
  • Data compression
  • Networks
Contact
jonathan [dot] weber [at] uha [dot] fr
+33 03 89 33 69 76
ENSISA
12, rue des frères Lumière
68093 Mulhouse FRANCE
Publications
Research Articles in International Journals
  1. Amina Ben Hamida, Maxime Devanne, Jonathan Weber, Caroline Truntzer, Valentin Derangère, François Ghiringhelli, Germain Forestier and Cédric Wemmert,
    Deep learning for colon cancer histopathological images analysis,
    Computers in Biology and Medicine, Vol. 136, 2021
    DOI
  2. Mounir Bendali-Braham, Jonathan Weber, Germain Forestier, Lhassane Idoumghar and Pierre-Alain Muller,
    Recent trends in crowd analysis: A review,
    Machine Learning with Applications, Vol. 4, 2021
    DOI
  3. Hassan Ismail Fawaz, Benjamin Lucas, Germain Forestier, Charlotte Pelletier, Daniel F. Schmidt, Jonathan Weber, Geoffrey I. Webb, Lhassane Idoumghar, Pierre-Alain Muller and François Petitjean,
    InceptionTime: Finding AlexNet for Time Series Classification,
    Data Mining and Knowledge Discovery, Vol. 34, pp. 1936–1962, 2020
    DOI
  4. Hassan Ismail Fawaz, Germain Forestier, Jonathan Weber, Lhassane Idoumghar and Pierre-Alain Muller,
    Accurate and interpretable evaluation of surgical skills from kinematic data using fully convolutional neural networks,
    International Journal of Computer Assisted Radiology and Surgery, Vol. 14, pp. 1611–1617, 2019
    DOI
  5. Vinh-Trung Luu, Germain Forestier, Jonathan Weber, Paul Bourgeois, Fahima Djelil and Pierre-Alain Muller,
    A review of alignment-based similarity measures for web usage mining,
    Artificial Intelligence Review, Vol. 53, pp. 1529–1551, 2019
    DOI
  6. Hassan Ismail Fawaz, Germain Forestier, Jonathan Weber, Lhassane Idoumghar and Pierre-Alain Muller,
    Deep learning for time series classification: a review,
    Data Mining and Knowledge Discovery, Vol. 33, pp. 917–963, 2019
    DOI
  7. Germain Forestier, François Petitjean, Pavel Senin, Fabien Despinoy, Arnaud Huaulmé, Hassan Ismail Fawaz, Jonathan Weber, Lhassane Idoumghar, Pierre-Alain Muller and Pierre Jannin,
    Surgical motion analysis using discriminative interpretable patterns,
    Artificial Intelligence in Medicine, Vol. 99, pp. 3-11 (9 pages), September 2018
    DOI
  8. Manuel Grand-Brochier, Antoine Vacavant, Camille Kurtz, Jonathan Weber, Laure Tougne,
    Tree Leaves Extraction in Natural Images: Comparative Study of Preprocessing Tools and Segmentation Methods,
    IEEE Transactions on Image Processing, Vol. 24, No. 5, pp. 1549-1560 (12 pages), May 2015
    PDF DOI
  9. François Petitjean, Jonathan Weber,
    Efficient Satellite Image Time Series Analysis Under Time Warping,
    IEEE Geoscience Remote Sensing Letters, Vol. 11, No. 6, pp. 1143-1147 (5 pages), June 2014.
    PDF DOI
  10. Jonathan Weber, Sébastien Lefèvre,
    Fast Quasi-Flat Zones Filtering Using Area Threshold and Region Merging,
    Journal of Visual Communication and Image Representation, Vol. 24, No. 3, pp. 397-409 (13 pages), April 2013.
    PDF DOI
  11. Jonathan Weber, Sébastien Lefèvre,
    Spatial and Spectral Morphological Template Matching,
    Image and Vision Computing, Vol. 30, No. 12, pp. 934-945 (12 pages), December 2012.
    PDF DOI
Communications to International Conferences and Workshops
  1. Alicia Roux, Sébastien Changey, Jonathan Weber, Jean-Philippe Lauffenburger,
    Projectile trajectory estimation: performance analysis of an Extended Kalman Filter and an Imperfect Invariant Extended Kalman Filter,
    International Conference on Systems and Control (ICSC), (6 pages), Caen, France, November 2021
    DOI
  2. Alicia Roux, Sébastien Changey, Jonathan Weber, Jean-Philippe Lauffenburger,
    CNN-based Invariant Extended Kalman Filter for projectile trajectory estimation using IMU only,
    International Conference on Control, Automation and Diagnosis (ICCAD), (6 pages), Grenoble, France, November 2021
    DOI
  3. Baptiste Lafabregue, Jonathan Weber, Pierre Gançarski, Germain Forestier,
    Grad Centroid Activation Mapping for Convolutional Neural Networks,
    International Conference on Tools with Artificial Intelligence (ICTAI), (8 pages), Virtual, November 2021
    DOI
  4. Mounir Bendali-Braham, Jonathan Weber, Germain Forestier, Lhassane Idoumghar, Pierre-Alain Muller,
    Ensemble classification of video-recorded crowd movements,
    International Symposium on Image and Signal Processing and Analysis (ISPA), (6 pages), Zagreb, Croatia, September 2021
    DOI
  5. Tsegamlak Terefe, Maxime Devanne, Jonathan Weber, Dereje Hailemariam and Germain Forestier,
    Time Series Averaging Using Multi-Tasking Autoencoder,
    International Conference on Tools with Artificial Intelligence (ICTAI), (8 pages), Baltimore, USA, November 2020
    DOI
  6. Milos Cuculovic, Frédéric Fondement, Maxime Devanne, Jonathan Weber and Michel Hassenforder,
    Change Detection on JATS Academic Articles: An XML Diff Comparison Study,
    ACM Symposium on Document Engineering (DocEng), (10 pages), San Diego, USA, September 2020
  7. Nolwenn Bernard, Jonathan Weber, Germain Forestier, Michel Hassenforder and Bastien Latard,
    Knowledge-Based Categorization of Scientific Articles for Similarity Predictions,
    International Conference on Theory and Practice of Digital Libraries (TPDL), (8 pages), Lyon, France, August 2020
  8. Robin Heckenauer, Jonathan Weber, Cédric Wemmert, Friedrich Feuerhake, Michel Hassenforder, Pierre-Alain Muller and Germain Forestier,
    Real-time detection of glomeruli in renal pathology,
    IEEE International Symposium on Computer Based Medical Systems (CBMS), (6 pages), Rochester, USA, July 2020
  9. Hojjat Rakhshani, Hassan Ismail Fawaz, Lhassane Idoumghar, Germain Forestier, Julien Lepagnot, Jonathan Weber, Mathieu Brevilliers and Pierre-Alain Muller,
    Neural Architecture Search for Time Series Classification,
    IEEE International Joint Conference on Neural Networks (IJCNN), (8 pages), Glasgow, UK, July 2020
  10. Hojjat Rakhshani, Bastien Latard, Mathieu Brevilliers, Jonathan Weber, Julien Lepagnot, Germain Forestier, Michel Hassenforder and Lhassane Idoumghar,
    Automated Machine Learning for Information Retrieval in Scientific Articles,
    IEEE Congress on Evolutionary Computation (CEC), (6 pages), Glasgow, UK, July 2020
  11. Baptiste Lafabregue, Jonathan Weber, Pierre Gançarski et Germain Forestier,
    Deep constrained clustering applied to remote sensing time series,
    ECML/PKDD Workshop on Machine Learning for Earth Observation data (MACLEAN), (9 pages), Würzburg, Germany, September 2019
  12. Mounir Bendali-Braham, Jonathan Weber, Germain Forestier, Lhassane Idoumghar and Pierre-Alain Muller,
    Transfer learning for the classification of video-recorded crowd movements,
    International Symposium on Image and Signal Processing and Analysis (ISPA), (6 pages), Dubrovnik, Croatia, September 2019.
  13. Hassan Ismail Fawaz, Germain Forestier, Jonathan Weber, Lhassane Idoumghar and Pierre-Alain Muller,
    Deep Neural Network Ensembles for Time Series Classification,
    IEEE International Joint Conference on Neural Networks (IJCNN), (6 pages), Budapest, Hungary, July 2019
  14. Hassan Ismail Fawaz, Germain Forestier, Jonathan Weber, Lhassane Idoumghar and Pierre-Alain Muller,
    Adversarial attacks on deep neural networks for time series classification,
    IEEE International Joint Conference on Neural Networks (IJCNN), (8 pages), Budapest, Hungary, July 2019
  15. Hassan Ismail Fawaz, Germain Forestier, Jonathan Weber, François Petitjean, Lhassane Idoumghar and Pierre-Alain Muller,
    Automatic alignment of surgical videos using kinematic data,
    Conference on Artificial Intelligence in Medecine (AIME), (10 pages), Poznan, Poland, June 2019
  16. Hassan Ismail Fawaz, Germain Forestier, Jonathan Weber, Lhassane Idoumghar and Pierre-Alain Muller,
    Transfer learning for time series classification,
    IEEE International Conference on Big Data, (8 pages), Seattle, USA, December 2018
  17. Hassan Ismail Fawaz, Germain Forestier, Jonathan Weber, Lhassane Idoumghar and Pierre-Alain Muller,
    Evaluating surgical skills from kinematic data using convolutional neural networks,
    Medical Image Computing and Computer Assisted Intervention (MICCAI), (8 pages), Granada, Spain, September 2018
  18. Hassan Ismail Fawaz, Germain Forestier, Jonathan Weber, Lhassane Idoumghar and Pierre-Alain Muller,
    Data augmentation using synthetic data for time series classification with deep residual networks,
    ECML/PKDD Workshop on Advanced Analytics and Learning on Temporal Data, (8 pages), Dublin, Ireland, September 2018
  19. Bastien Latard, Jonathan Weber, Germain Forestier and Michel Hassenforder,
    Using Semantic Relations between Keywords to Categorize Articles from Scientific Literature,
    International Conference on Tools with Artificial Intelligence (ICTAI), (5 pages), Boston, USA, November 2017
  20. Bastien Latard, Jonathan Weber, Germain Forestier and Michel Hassenforder,
    Towards a Semantic Search Engine for Scientific Articles,
    International Conference on Theory and Practice of Digital Libraries (TPDL), (4 pages), Thessaloniki, Greece, September 2017
    DOI
  21. Rachida Es-Salhi, Imane Daoudi, Jonathan Weber, Hamid El Ouardi, Saida Tallal, Hicham Medromi,
    Multi-scale image co-segmentation,
    Advances in Ubiquitous Networking: Proceedings of the UNet'15, Springer Singapore, pp. 381-390 (10 pages), Casablanca, Morocco, September 2015
    DOI
  22. Erhan Aptoula, Jonathan Weber, Sébastien Lefèvre,
    Vectorial Quasi-flat Zones for Color Image Simplification,
    International Symposium on Mathematical Morphology (ISMM), Springer-Verlag Lecture Notes in Computer Science, Vol. 7883, pp. 231-242 (12 pages), Uppsala, Sweden, May 2013.
    PDF DOI SLIDES
  23. Jonathan Weber, Salvatore Tabbone,
    Symbol spotting for technical documents : An efficient template-Matching approach,
    International Conference on Pattern Recognition (ICPR), 4 pages, Tsukuba, Japan, November 2012.
    PDF URL POSTER
  24. Michal Kowalczyk, Bertrand Kerautret, Benoît Naegel, Jonathan Weber,
    Revisiting Component Tree Based Segmentation Using Meaningful Photometric Informations,
    International Conference on Computer Vision and Graphics (ICCVG), Springer-Verlag Lecture Notes in Computer Science, Vol. 7594, pp. 475-482 (8 pages), Warsaw, Poland, September 2012.
    PDF DOI POSTER
  25. Jonathan Weber, François Petitjean, Pierre Gançarski,
    Towards efficient satellite time series analysis: combination of Dynamic Time Warping and Quasi-Flat Zones,
    IEEE International Geoscience and Remote Sensing Symposium (IGARSS), pp. 4387-4390 (4 pages), Munchen, Germany, July 2012.
    PDF DOI POSTER
  26. Jonathan Weber, Sébastien Lefèvre, Pierre Gançarski,
    Interactive Video Segmentation based on Quasi-Flat Zones,
    International Symposium on Image and Signal Processing and Analysis (ISPA), pp. 265-270 (6 pages), Dubrovnik, Croatia, September 2011.
    PDF URL SLIDES
  27. Jonathan Weber, Sébastien Lefèvre, Pierre Gançarski,
    Spatio-temporal quasi-flat zones for morphological video segmentation,
    International Symposium on Mathematical Morphology (ISMM), Springer-Verlag Lecture Notes in Computer Science, Vol. 6671, pp. 178-189 (12 pages), Intra, Italy, July 2011.
    PDF DOI POSTER
  28. Jonathan Weber, Sébastien Lefèvre, Pierre Gançarski,
    Video Object Mining : Issues and Perspectives,
    IEEE International Conference on Semantic Computing (ICSC), pp. 85-90 (6 pages), Pittsburgh, USA, September 2010.
    PDF URL SLIDES
  29. Jonathan Weber, Sébastien Lefèvre,
    A multivariate Hit-or-Miss transform for conjoint spatial and spectral template matching,
    IEEE International Conference on Image and Signal Processing (ICISP), Springer-Verlag Lecture Notes in Computer Sciences, Vol. 5099, pp. 226-235 (10 pages), Cherbourg, France, August 2008.
    PDF DOI SLIDES
  30. Anne Puissant, Sébastien Lefèvre, Jonathan Weber,
    Coastline extraction in VHR imagery using mathematical morphology with spatial and spectral knowledge,
    International Society for Photogrammetry and Remote Sensing Congress (ISPRS), 6 pages, Beijing, China, July 2008.
    PDF URL
  31. Sébastien Lefèvre, Jonathan Weber, David Sheeren,
    Automatic building extraction in VHR images using advanced morphological operators,
    IEEE/ISPRS Joint Workshop on Remote Sensing and Data Fusion over Urban Areas (URBAN), 5 pages, Paris, France, April 2007.
    PDF DOI
Book Chapters
  1. Cédric Wemmert, Jonathan Weber, Friedrich Feuerhake, Germain Forestier,
    Deep Learning for Histopathological Image Analysis,
    Deep Learning for Biomedical Data Analysis, Springer,pp. 153-169 (17 pages), 2021.
    DOI
  2. Sébastien Lefèvre, Erhan Aptoula, Benjamin Perret, Jonathan Weber,
    Morphological Template Matching in Color Images,
    Advances in Low-Level Color Image Processing, Springer,pp. 241-277 (37 pages), 2013.
    DOI
Editorial Activities in french
  1. Julien Longhi, Jonathan Weber,
    La communication numérique, du code à l'information, L'Harmattan, 2018.
    DOI
Book Chapters in french
  1. Jonathan Weber,
    Enseigner l’informatique en DUT MMI : Difficultés et retours d’expérience,
    La communication numérique, du code à l'information, L'Harmattan,pp. 155-177 (23 pages), 2018.
    DOI
Research Articles in National Journals
  1. Cédric Wemmert, Jonathan Weber, Germain Forestier,
    Intelligence artificielle et analyse d’images histologiques : Opportunités et challenges,
    Revue française d'histotechnologie, Vol. 32, No. 1, pp. 213-238 (26 pages), 2020.
    DOI
  2. David Sheeren, Sébastien Lefèvre, Jonathan Weber,
    La morphologie mathématique binaire pour l'extraction automatique des bâtiments dans les images THRS,
    Revue Internationale de Géomatique, numéro thématique "Informations géographiques : structuration, extraction et utilisation", Vol. 17, No. 3-4, pp. 333-352 (20 pages), 2007.
    PDF DOI
Communications to National Conferences and Workshops
  1. Robin Heckenauer, Jonathan Weber, Cédric Wemmert, Friedrich Feuerhake, Michel Hassenforder, Pierre-Alain Muller, Germain Forestier,
    Détection en temps réel des glomérules en pathologie rénale,
    Journées francophones des jeunes chercheurs en vision par ordinateur, ORASIS 2021, (8 pages), Saint-Ferréol, France, September 2021.
  2. Mounir Bendali-Braham, Jonathan Weber, Germain Forestier, Lhassane Idoumghar, Pierre-Alain Muller,
    Classification ensembliste de vidéos de mouvements de foule,
    Journées francophones des jeunes chercheurs en vision par ordinateur, ORASIS 2021, (9 pages), Saint-Ferréol, France, September 2021.
  3. Ilias Rmouque, Maxime Devanne, Jonathan Weber, Germain Forestier, Cédric Wemmert,
    Segmentation non-supervisée d'images histopathologiques à l'aide d'auto-encodeurs et d'ensemble clustering,
    Atelier Apprentissage profond: Théorie et Applications (APTA), Journées Francophones Extraction et Gestion des Connaissances (EGC), (10 pages), Montpellier, France, September 2021.
  4. Tsegamlak Terefe, Maxime Devanne, Jonathan Weber, Dereje Hailemariam, Germain Forestier,
    Auto-encodeur multi-tâches pour le calcul de moyennes de séries temporelles,
    Atelier Apprentissage profond: Théorie et Applications (APTA), Journées Francophones Extraction et Gestion des Connaissances (EGC), (15 pages), Montpellier, France, September 2021.
  5. Jade Pétrault, Julien Longhi, Carine Duteil-Mougel, Matthieu Bach, Jonathan Weber, Arnaud Richard and Didier Tsala-Effa,
    Triche et signalement sur Strava : analyse des stratégies discursives et des positionnements énonciatifs à l’oeuvre dans le contrôle de la performance sportive,
    Colloque Sports, culture matérielle et culture populaire, Besançon, France, September 2020.
    PDF
  6. Baptiste Lafabregue, Jonathan Weber, Pierre Gançarski and Germain Forestier,
    Clustering contraint par apprentissage profond appliqué aux séries temporelles d'images satellites,
    Atelier Apprentissage profond: Théorie et Applications (APTA), Journées Francophones Extraction et Gestion des Connaissances (EGC), (10 pages), Bruxelles, Belgium, January 2020.
  7. Mounir Bendali-Braham, Jonathan Weber, Germain Forestier, Lhassane Idoumghar and Pierre-Alain Muller,
    Apprentissage par transfert pour la classification de séquences vidéo de mouvements de foule,
    Atelier Apprentissage profond: Théorie et Applications (APTA), Journées Francophones Extraction et Gestion des Connaissances (EGC), (10 pages), Bruxelles, Belgium, January 2020.
  8. Hassan Ismail Fawaz, Germain Forestier, Jonathan Weber, Lhassane Idoumghar and Pierre-Alain Muller,
    Augmentation de données utilisant des données synthétiques pour la classification de séries temporelles par réseaux profonds résiduels,
    Journées Francophones Extraction et Gestion des Connaissances (EGC), 2 pages, Metz, France, January 2019.
  9. Bastien Latard, Jonathan Weber, Germain Forestier, Michel Hassenforder,
    Catégorisation d’articles scientifiques basée sur les relations sémantiques des mots-clés,
    Journées Francophones Extraction et Gestion des Connaissances (EGC), 2 pages, Paris, France, January 2018.
  10. Bastien Latard, Jonathan Weber, Germain Forestier, Michel Hassenforder,
    Utilisation des relations sémantiques des mots-clés pour la catégorisation d’articles scientifiques,
    Atelier Science des Données et Humanités Numériques (SDHN), Journées Francophones Extraction et Gestion des Connaissances (EGC), 12 pages, Paris, January 2018.
  11. Jonathan Weber, Sébastien Lefèvre, Pierre Gançarski,
    Segmentation vidéo interactive par zones quasi-plates,
    Colloque GRETSI sur le Traitement du Signal et des Images, 4 pages, Bordeaux, France, September 2011.
    PDF POSTER
  12. Jonathan Weber, Sébastien Lefèvre, Pierre Gançarski,
    Zones quasi-plates spatio-temporelles et segmentation morphologique de séquences vidéo,
    Congrès des jeunes chercheurs en vision par ordinateur (ORASIS), 8 pages, Praz-sur-arly, France, June 2011.
    PDF POSTER
  13. Jonathan Weber, Sébastien Lefèvre, Pierre Gançarski,
    Fouille vidéo orientée objet, une approche générique,
    Atelier Fouille de données complexes, Journées Francophones Extraction et Gestion des Connaissances (EGC), pp. 9-20 (12 pages), Brest, France, January 2011.
    PDF SLIDES
  14. Jonathan Weber, Sébastien Lefèvre, David Sheeren,
    Détection des bâtiments dans les images THRS avec la morphologie mathématique,
    Colloque International de Géomatique et d'Analyse Spatiale (SAGEO), 5 pages, Strasbourg, France, September 2006.
    PDF
Dissertations
  1. Jonathan Weber,
    Segmentation morphologique interactive pour la fouille de séquences vidéo,
    PhD dissertation, 155 pages, Université de Strasbourg, France, September 2011.
    PDF SLIDES
  2. Jonathan Weber,
    Détection d’objets géographiques du littoral dans des images satellites multispectrales,
    Master dissertation, 60 pages, Université de Strasbourg, France, June 2007.
    PDF SLIDES
Other communications
  1. Jonathan Weber, Salvatore Tabbone,
    Localisation de symboles dans des documents techniques,
    Congrès National de la Recherche en IUT (CNRIUT), 1 page, Épinal, France, March 2015.
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  2. Rachida Es-Salhi, Imane Daoudi, Hamid El Ouardi, Jonathan Weber,
    Co-segmentation des images : État de l’art,
    Journées Doctorales en Technologies de l’Information et de la Communication (JDTIC), Rabat, Morocco, March 2014
  3. Jonathan Weber, Sébastien Lefèvre, David Sheeren,
    Extraction automatique de bâtiments dans des images satellites THRS en utilisant des opérateurs de Morphologie Mathématique,
    Atelier du Programme de Télédétection Spatiale (PNTS), 1 page, Nantes, France, September 2007.
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